Here are my records on ORCID and Google Scholar.

Journal Articles (Peer reviewed)

  • Lisa M. Berg, Caroline Gurr, Johanna Leyhausen, Hanna Seelemeyer, Anke Bletsch, Tim Schaefer, Charlotte M. Pretzsch, Bethany Oakley, Eva Loth, Dorothea L. Floris, Jan K. Buitelaar, Christian F. Beckmann, Tobias Banaschewski, Tony Charman, Emily J. H. Jones, Julian Tillmann, Chris H. Chatham, Thomas Bourgeron, The EU-AIMS LEAP Group, Declan G. Murphy and Christine Ecker. The neuroanatomical substrates of autism and ADHD and their link to putative genomic underpinnings. Molecular Autism 14, 36 (2023). DOI: 10.1186/s13229-023-00568-z
  • Johanna Leyhausen, Tim Schäfer, Caroline Gurr, Lisa M. Berg, Hanna Seelemeyer, Charlotte M. Pretzsch, Eva Loth, Bethany Oakley, Jan K. Buitelaar, Christian F. Beckmann, Dorothea L. Floris, Tony Charman, Thomas Bourgeron, Tobias Banaschewski, Emily J.H. Jones, Julian Tillmann, Chris Chatham, The EUAIMS LEAP Group, Declan G. Murphy and Christine Ecker. Differences in Intrinsic Gray Matter Connectivity and Their Genomic Underpinnings in Autism Spectrum Disorder. Biological Psychiatry 0006-3223 (2023). DOI: 10.1016/j.biopsych.2023.06.010
  • Stephan Nebe, Mario Reutter, Daniel H Baker, Jens Bölte, Gregor Domes, Matthias Gamer, Anne Gärtner, Carsten Gießing, Caroline Gurr, Kirsten Hilger, Philippe Jawinski, Louisa Kulke, Alexander Lischke, Sebastian Markett, Maria Meier, Christian J Merz, Tzvetan Popov, Lara MC Puhlmann, Daniel S Quintana, Tim Schäfer, Anna-Lena Schubert, Matthias FJ Sperl, Antonia Vehlen, Tina B Lonsdorf, and Gordon B Feld. Enhancing precision in human neuroscience. eLife 12:e85980 (2023). DOI: 10.7554/eLife.85980
  • Charlotte M. Pretzsch, Dorothea L. Floris, Tim Schäfer, Anke Bletsch, Caroline Gurr, Michael V. Lombardo, Chris H. Chatham, Julian Tillmann, Tony Charman, Martina Arenella, Emily Jones, Sara Ambrosino, Thomas Bourgeron, Guillaume Dumas, Freddy Cliquet, Claire S. Leblond, Eva Loth, Bethany Oakley, Jan K. Buitelaar, Simon Baron-Cohen, Christian F. Beckmann, Antonio M. Persico, Tobias Banaschewski, Sarah Durston, Christine M. Freitag, EU-AIMS/AIMS-2-TRIALS Consortium, Declan G. M. Murphy, and Christine Ecker. Cross-sectional and longitudinal neuroanatomical profiles of distinct clinical (adaptive) outcomes in autism. Molecular Psychiatry (2023). DOI: 10.1038/s41380-023-02016-z
  • Hollestein, V., Poelmans, G., Forde, N.J., Beckman, C.F., Ecker, C., Mann, C., Schäfer, T., Moessnang, C., Baumeister, S., Banaschweski, T., Bourgeron, T., Loth, E., Dell’Acqua, F., Murphy, D.G.M., Puts, N.A., Tillmann, J., Charman, T., Jones, E.J.H., Mason, L., Ambrosino, S., Holt, R., Bölte, S., Buitelaar, J.K., and Naaijen, J. Excitatory/inhibitory imbalance in autism: the role of glutamate and GABA gene-sets in symptoms and cortical brain structure. Transl Psychiatry 13, 18 (2023). DOI: 10.1038/s41398-023-02317-5
  • Bienek, V., Bletsch, A., Mann, C., Schaefer, T., …, Ecker, C. (2021) Longitudinal Changes in Cortical Thickness in Adolescents with Autism Spectrum Disorder and Their Association with Restricted and Repetitive Behaviors. Genes 2021, 12(12). DOI: 10.3390/genes12122024
  • Ecker, C., Pretzsch, C. M., Bletsch, A., Mann, C., Schaefer, T., Ambrosino, S., … & Murphy, D. G. (2021). Interindividual Differences in Cortical Thickness and Their Genomic Underpinnings in Autism Spectrum Disorder. American Journal of Psychiatry, appi-ajp. DOI: 10.1176/appi.ajp.2021.20050630
  • Bletsch, A., Schäfer, T., Mann, C., Andrews, D. S., Daly, E., Gudbrandsen, M., … & Ecker, C. (2021). Atypical measures of diffusion at the gray‐white matter boundary in autism spectrum disorder in adulthood. Human brain mapping, 42(2), 467-484. DOI: 10.1002/hbm.25237
  • Schäfer, T., Mann, C., Bletsch, A., Zimmermann, J., Seelemeyer, H., Herøy, N., & Ecker, C. (2021). Die Kortexdicke bei Autismus-Spektrum-Störung wird moduliert durch eine komorbide Aufmerksamkeitsdefizit-/Hyperaktivitätsstörung. Kindheit und Entwicklung. DOI: 10.1026/0942-5403/a000329
  • Caroline Mann, Tim Schäfer, Anke Bletsch, Maria Gudbrandsen, Eileen Daly, John Suckling, Edward T. Bullmore et al. Examining volumetric gradients based on the frustum surface ratio in the brain in autism spectrum disorder. Human brain mapping 42, no. 4 (2021): 953-966. DOI: 10.1002/hbm.25270
  • Jennifer Hannig, Hendrik Schäfer, Jörg Ackermann, Marie Hebel, Tim Schäfer, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann and Ina Koch. Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma. PLOS Computational Biology, 2020. DOI: 10.1371/journal.pcbi.1007516
  • Ina Koch and Tim Schäfer. Protein super-secondary structure and quaternary structure topology: theoretical description and application. Current Opinion in Structural Biology 50:134-143, 2018. DOI: 10.1016/j.sbi.2018.02.005
  • Tim Schäfer, Andreas Scheck, Daniel Bruneß, Patrick May, and Ina Koch. The new Protein Topology Graph Library web server. Bioinformatics, 32(3):474–476, 2016. DOI: 10.1093/bioinformatics/btv574
  • Hendrik Schäfer, Tim Schäfer, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, and Ina Koch. CD30 cell graphs of Hodgkin lymphoma are not scale-free – An image analysis approach. Bioinformatics, 32(1):122–129, 2016. DOI: 10.1093/bioinformatics/btv542.
  • Tim Schäfer, Hendrik Schäfer, Alexander Schmitz, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, and Ina Koch. Image database analysis of Hodgkin lymphoma. Computational Biology and Chemistry 46C:1-7, 2013. DOI: 10.1016/j.compbiolchem.2013.04.003
  • Tim Schäfer, Patrick May, and Ina Koch. Computation and Visualization of Protein Topology Graphs Including Ligand Information. German Conference on Bioinformatics 2012 (Proceedings). DOI: 10.4230/OASIcs.GCB.2012.108
  • Gregor Moenke, Tim Schaefer, Mohsen Parto-Dezfouli, Diljit Singh Kajal, Stefan Fuertinger, Joscha Tapani Schmiedt, and Pascal Fries. (2024) Systems Neuroscience Computing in Python (SyNCoPy): A Python Package for Large-scale Analysis of Electrophysiological Data. bioRxiv 2024.04.15.589590; DOI: 10.1101/2024.04.15.589590
  • Viola Hollestein, Geert Poelmans, Natalie J Forde, Christian F Beckmann, Christine Ecker, Caroline Mann, Tim Schäfer,…, Jilly Naaijen. (2021) Excitatory/inhibitory imbalance in autism: the role of glutamate and GABA gene-sets in symptoms and cortical brain structure. DOI: 10.1101/2021.12.20.473501
  • Tim Schäfer and Christine Ecker. (2020) fsbrain: an R package for the visualization of structural neuroimaging data. Preprint at biorxiv. DOI: 10.1101/2020.09.18.302935
  • Jennifer Scheidel, Hendrik Schäfer, Jörg Ackermann, Marie Hebel, Tim Schäfer, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, and Ina Koch. Bioinformatics analysis quantifies neighborhood preferences of cancer cells in Hodgkin lymphoma. DOI: 10.1101/228981
  • Alexander Schmitz, Tim Schäfer, Hendrik Schäfer, Claudia Döring, Jörg Ackermann, Norbert Dichter, Sylvia Hartmann, Martin-Leo Hansmann, and Ina Koch. Automated Image Analysis of Hodgkin lymphoma. Dagstuhl Seminar 12291 “Structure Discovery in Biology: Motifs, Networks & Phylogenies”. DOI: 10.48550/arXiv.1209.3189

Conference Talks

  • Tim Schäfer, Caroline Mann, Anke Bletsch, Eva Loth, Declan Murphy, Jan Buitelaar, Tony Charman, Tobias Banaschewski, Simon Baron-Cohen, Sven Bölte, Sarah Durston, the EU-AIMS LEAP consortium and Christine Ecker. Atypical Scaling Between the Inner and Outer Curvature of the Brain in Autism Spectrum Disorder. INSAR Annual Meeting 2019, Montreal, Canada, May 1-4 (2019).
  • Tim Schäfer, Patrick May, and Ina Koch. Computation and Visualization of Protein Topology Graphs including ligand information. Talk at German Conference on Bioinformatics 2012, Jena, Germany. Slides: @figshare, @f1000.
  • Tim Schäfer, Hendrik Schäfer, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, and Ina Koch. Analysis of the distribution of CD30+ cells in classical Hodgkin lymphoma and Lymphadenitis using graph-based methods. Talk at 99. Jahrestagung der Deutschen Gesellschaft für Pathologie, Frankfurt am Main, Germany (2015). Slides @figshare., Abstract published in ‘Der Pathologe’. Edition 36, Supplement 1, May 2015 (PDF).
  • Tim Schäfer, Hendrik Schäfer, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, and Ina Koch. CD30 cell graphs of Hodgkin lymphoma are not scale-free – an image analysis approach. Highlight talk at Intelligent Systems for Molecular Biology 2016. Orlando, FL, USA. Slides @slideshare.

Posters and Conferences (Selection)

  • Hanna Seelemeyer, Caroline Mann, Lisa Berg, Johanna Leyhausen, Anke Bletsch, Tim Schäfer, Charlotte Pretzsch, Eva Loth, Jan Buitelaar, Tony Charman, Thomas Bourgeron, the EU-AIMS LEAP Consortium, Declan Murphy, Christine Ecker. Symptom severity in the two DSM-V symptom domains is differentially associated with neuroanatomical and genomic underpinnings of autism spectrum disorder. WTAS 2023, Freiburg, Deutschland, 2023.
  • Tim Schäfer and Christine Ecker. Managing and Visualizing Freesurfer Neuroimaging Data in R – the Freesurferformats and Fsbrain Packages. INSAR 2020 Annual Meeting, (virtual), June 3 (2020). Abstract, ePoster.
  • Tim Schäfer, Caroline Mann, Anke Bletsch, Eva Loth, Declan Murphy, Jan Buitelaar, Tony Charman, Tobias Banaschewski, Simon Baron-Cohen, Sven Bölte, Sarah Durston, the EU-AIMS LEAP consortium and Christine Ecker. Atypical Scaling Between the Inner and Outer Curvature of the Brain in Autism Spectrum Disorder. OHBM 2019, Rome, Italy, June 9-13 (2019).
  • Hendrik Schäfer, Tim Schäfer, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann and Ina Koch. Graph-based analysis of CD30+ cell distributions in Hodgkin Lymphoma. ISMB 2016, Orlando, FL, USA, July 8-12 (2016).
  • Tim Schäfer, Ben Haladik, Julian Gruber-Roet, Andreas Scheck and Ina Koch. The Protein Topology Graph Library web server. ISMB 2016, Orlando, FL, USA, July 8-12 (2016). Slides @f1000.
  • Hendrik Schäfer, Tim Schäfer, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann and Ina Koch. Graph-based analysis of CD30+ cell distributions in Hodgkin Lymphoma. GCB 2015, Dortmund, Germany, September 27-30 (2015). Abstract at PeerJ.
  • Hendrik Schäfer, Tim Schäfer, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann and Ina Koch. Spatial distribution of cells in Hodgkin Lymphoma. GCB 2013, Göttingen, Germany, September 10-13 (2013). Slides @figshare, @f1000.
  • Tatiana Bakirova, Tim Schäfer, Ina Koch. Comparison of protein topology graphs using graphlet-based methods. GCB 2013, Göttingen, Germany, September 10-13 (2013). Slides @figshare, @f1000.
  • Tim Schäfer and Ina Koch. Computation and Visualization of Protein Topology Graphs including ligand information. GCB 2012, Jena, Germany. Slides at @f1000, @figshare.
  • Tim Schäfer, Patrick May and Ina Koch. Extension of protein topologies by ligand interactions: computation and visualization. Molecular Life Sciences 2011. Frankfurt, Germany, September 25-29 (2011). Slides @figshare.
  • Tim Schäfer, Patrick May and Ina Koch. Analysis of protein topology by graph theoretical methods. German Conference on Bioinformatics 2011. Weihenstephan, Germany, September 7-9 (2011).
  • A. Schmitz, T. Schäfer, H. Schäfer, C. Döring, J. Ackermann, N. Dichter, S. Hartmann, M.-L. Hansmann, and I. Koch. Automated Image Analysis of Hodgkin lymphoma. German Conference on Bioinformatics, Jena, Germany, September 19-22 (2012). Slides @figshare.